Osnova sekce

►Topic 1 _Literature search
    • Oznámení Fórum

    • Introduction to applied bioinformatics

      voluntary subject

      Assoc. Prof. Ing. Petra Matoušková, Ph.D.

      contact: matousp7@faf.cuni.cz

    • Aims

      The aim of this course is to learn the basics of bioinformatics data, mainly gene and protein sequences, their formats, database retrieval, comparison, similarity searches, and related topics.
       

      The lectures will be in the computer study room (S2250)

    • Organisation

      credit: 

      attendance requirement (8/10) + compulsory homeworks: ¨HW" from each lecture.

      exam: 

      "written" by computer, 2 sets of 5 tasks (1hour/ submitted via Moodle)

    • Example of all HWs (in czech) Soubor

    • Literature

      Applied bioinformatics - An introduction, P. Selzer, 2018

      Knowledge Discovery in Bioinformatics, X. Hu, Y. Pan, 2007

    • Schedule 2026 Stránka

    • Topics

      1. Literature search

      2. Protein bioinformatics I - sequences, features, digestions

      3. Protein bioinformatics II - domains, transmembrane helices, BLAST

      4. Protein bioinformatics III + sum up I - sequence comparison, multiple alignmet, 3D

      5. Nucleotide bioinformatics I - sequences, features

      6. Nucleotide bioinformatics II - translation, identification, sequencing

      7. Nucleotide bioinformatics III - RE digestion, primers

      8. Nucleotide bioinformatics IV -  cloning, specific primers

      9. Nucleotide bioinformatics V - qPCR primers, DNA/RNA secondary structure, mutagenesis primers

      10. Summary, examples

      11. Exam

►Topic 1 _Literature search