Examples

Example A: comparison of short sequence and long sequence

>sequence

GGGCACACTCCAGCAGACGCCCGAATTCAAATCCTGGAAGGATGGAAGAAACGCCTGGAGAATATTTGGG ATGAGACACCACTGTATTTTGCTCCAAGCAGCCTCTTTGACCTAAACTTCCAGGCAGGATTCTTAATGAA AAAAGAGGTACAGGATGAGGAGAAAAACAAGAAATTTGGCCTTTCTGTGGGCCATCACTTGGGCAAGTCC ATCCCAACTGACAACCAGATCAAAGCTAGAAAATGAGATTCCTTAGCCTGGATTTCCTTCTAACATGTTA TCAAATCTGGGTATCTTTCCAGGCTTCCCTGACTTGCTTTAGTTTTTAAGATTTGTGTTTTTCTTTTTCC ACAAGGAATAAATGAGAGGGAATCGACTGTATTCGTGCATTTTTGGATCATTTTTAACTGATTCTTATGA TTACTATCATGGCATATAACCAAAATCCGACTGGGCTCAAGAGGCCACTTAGGGAAAGATGTAGAAAGAT

>2.exon

CAGGATGAGGAGAAAAACA

Example B: comparison of two DNA sequences

>mRNA-CDNA
GGCAGAAGAGCAC
TGATCGTACTGGCTCACTCAGAGAGGACGTCCTTCAACTATGCCATGAAGGAGGCTGCTG
CAGCGGCTTTGAAGAAGAAAGGATGGGAGGTGGTGGAGTCGGACCTCTATGCCATGAACT
TCAATCCCATCATTTCCAGAAAGGACATCACAGGTAAACTGAAGGACCCTGCGAACTTTC
AGTATCCTGCCGAGTCTGTTCTGGCTTATAAAGAAGGCCATCTGAGCCCAGATATTGTGG
CTGAACAAAAGAAGCTGGAAGCCGCAGACCTTGTGATAT
>gDNA_partial  
GCCACTGATTTAAATGCTTCCTTTAATCTTCAGTGCTTTTAAGGGGAAAATACATTTCTG
GCTACAGGAGATGGAATGCAATAACCTAATGTCAAACAAAGCCGCCCCCTCCTTTACAGA
CTGCAACTCCCCTGTAGCTGAAGGTTTGCTGGTTGGTAATGGGTTTTCCGTGTGTGCTTT
GTGTGTGTCTCTGTAGGCAGAAGAGCACTGATCGTACTGGCTCACTCAGAGAGGACGTCC
TTCAACTATGCCATGAAGGAGGCTGCTGCAGCGGCTTTGAAGAAGAAAGGATGGGAGGTG
GTGGAGTCGGACCTCTATGCCATGAACTTCAATCCCATCATTTCCAGAAAGGACATCACA
GGTAGGAGGAGTTCCTCCTCCCCTCTTTAATTAGTTCTTTGCGGATCTCCTTGCCTGTGG
GTCCTCTGGCCCAGCTTTGGCCCCTCTGGCCCCAGCCTCTCTTTTTCTTCTCTGCAGGTA
AACTGAAGGACCCTGCGAACTTTCAGTATCCTGCCGAGTCTGTTCTGGCTTATAAAGAAG