Section outline


    • Protein databases /  sequences retrieval

      Expasy / UniProtV%C3%BDst%C5%99i%C5%BEek%20%282%29.PNG

      Expasy is Swiss bioinformatics resource portal providing access to databases and software tools from a range of life science including genomics, proteomics, system biology etc.

      Uniprot V%C3%BDst%C5%99i%C5%BEek2.PNGis high-quality and freely accessible resource of protein sequence and functional information.
      detail tutorial: 

      NCBI protein

      V%C3%BDst%C5%99i%C5%BEek%20%283%29.PNG"National Center for Biotechnology Information Protein" The Protein database is a collection of sequences from several sources, including translations from annotated coding regions.

    • Example of FASTA format Страница

    • Protein sequence analyses

    • SMS: The Sequence Manipulation Suite - lots of small programs in JavaScript for various sequence manipulations (Molecular weight, Isoelectric point, statistics, range extractor etc.)

    • PeptideCutter:  predicts potential cleavage sites cleaved by proteases or chemicals in a given protein sequence. 

    • Lesson 2 Файл
    • HW2: Proteins I Задание